RAD Tools
نویسنده
چکیده
1
منابع مشابه
Special features of RAD Sequencing data: implications for genotyping
Restriction site-associated DNA Sequencing (RAD-Seq) is an economical and efficient method for SNP discovery and genotyping. As with other sequencing-by-synthesis methods, RAD-Seq produces stochastic count data and requires sensitive analysis to develop or genotype markers accurately. We show that there are several sources of bias specific to RAD-Seq that are not explicitly addressed by current...
متن کاملRAD and Other Innovative Approaches to Facilitate Superior Project Management
Rapid Application Development (RAD) is promising to bring many benefits and state-of-the-art uses to the discipline of software engineering. The plethora of low cost RAD tools, together with the claims made by advocates of this methodology, has lead to an explosion in the use of this technique across the field. Unfortunately, however, there has been comparatively little regard in context to the...
متن کاملAn optimized approach for local de novo assembly of overlapping paired-end RAD reads from multiple individuals
Restriction site-associated DNA (RAD) sequencing is revolutionizing studies in ecological, evolutionary and conservation genomics. However, the assembly of paired-end RAD reads with random-sheared ends is still challenging, especially for non-model species with high genetic variance. Here, we present an efficient optimized approach with a pipeline software, RADassembler, which makes full use of...
متن کاملConstruct validity of 2 measures to assess reasons for antipsychotic discontinuation and continuation from patients’ and clinicians’ perspectives in a clinical trial
BACKGROUND Little is known about the specific reasons for antipsychotic discontinuation or continuation from patients' or clinicians' perspectives. This study aimed to assess the construct validity of 2 new measures of the Reasons for Antipsychotic Discontinuation/Continuation (RAD): RAD-I (a structured interview assessing the patient's perspective) and RAD-Q (a questionnaire assessing the clin...
متن کاملRainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
MOTIVATION The innovation of restriction-site associated DNA sequencing (RAD-seq) method takes full advantage of next-generation sequencing technology. By clustering paired-end short reads into groups with their own unique tags, RAD-seq assembly problem is divided into subproblems. Fast and accurately clustering and assembling millions of RAD-seq reads with sequencing errors, different levels o...
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